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Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)

  • Jerome H.L. Hui
  • , Ting Fung Chan
  • , Leo Lai Chan
  • , Siu Gin Cheung
  • , Chi Chiu Cheang
  • , James Kar Hei Fang
  • , Juan Diego Gaitan-Espitia
  • , Stanley Chun Kwan Lau
  • , Yik HeiSung
  • , Chris Kong Chu Wong
  • , Kevin Yuk Lap Yip
  • , Yingying Wei
  • , Tze Kiu Chong
  • , Sean Tsz Sum Law
  • , Wenyan Nong
  • , Ho Yin Yip

Research output: Journal article publicationJournal articleAcademic researchpeer-review

Abstract

The edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has found application in food additives, given its ability to synthesize long-chain glycolipids, among other uses. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size is 29.2 Mb. It has high sequence contiguity and completeness, with a scaffold N50 of 1.925 Mb and a 92.0% BUSCO score. A total of 11,510 protein-coding genes and 474.7 kb repeats (accounting for 1.62% of the genome) were predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology, such as their wood-decaying capability, their evolutionary relationships with other fungi, and their unique biology and applications in the food industry.

Original languageEnglish
JournalGigaByte
Volume2024
DOIs
Publication statusPublished - 25 Apr 2024

Keywords

  • Ecology
  • Evolutionary Biology
  • Subjects Genetics and Genomics

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology (miscellaneous)
  • Biotechnology
  • Genetics
  • Molecular Medicine

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