Advancing Tree Species Classification with Multi-Temporal UAV Imagery, GEOBIA, and Machine Learning

Accurate classification of tree species is crucial for forest management and biodiversity conservation. Remote sensing technology offers a unique capability for classifying and mapping trees across large areas; however, the accuracy of extracting and identifying individual trees remains challenging due to the limitations of available imagery and phenological variations. This study presents a novel integrated machine learning (ML) and Geographic Object-Based Image Analysis (GEOBIA) framework to enhance tree species classification in a botanical garden using multi-temporal unmanned aerial vehicle (UAV) imagery. High-resolution UAV imagery (2.3 cm/pixel) was acquired across four different seasons (summer, autumn, winter, and early spring) to incorporate the phenological changes. Spectral, textural, geometrical, and canopy height features were extracted using GEOBIA and then evaluated with four ML models (Random Forest (RF), Extra Trees (ET), eXtreme gradient boost (XGBoost), and Support Vector Machine (SVM)). Multi-temporal data significantly outperformed single-date imagery, with RF achieving the highest overall accuracy (86%, F1-score 0.85, kappa 0.83) compared to 57–75% for single-date classifications. Canopy height and textural features were dominant for species identification, indicating the importance of structural variations. Despite the limitations of moderate sample size and a controlled botanical garden setting, this approach offers a robust framework for forest and urban landscape managers as well as remote sensing professionals, by optimizing UAV-based strategies for precise tree species identification and mapping to support urban and natural forest conservation.